Difference between revisions of "DryadLab"

From Dryad wiki
Jump to: navigation, search
(Item display)
m
 
(31 intermediate revisions by 5 users not shown)
Line 1: Line 1:
DryadLab is the educational section of Dryad.
+
'''Please note: The DryadLab project is no longer active, but the modules can still be downloaded at the links below.'''
 +
 
 +
DryadLab is an educational extension of Dryad. It consists of hands-on data analysis learning activities for advanced placement, undergrad, and graduate-level courses based on data within the repository. The activities were developed as a collaboration between researchers and educators, and tested by educators in the classroom.
  
 
== Basic Organization ==
 
== Basic Organization ==
  
DryadLab will be styled the same as the repository, and integrate closely with repository content, but it will not be implemented as part of DSpace. The target audience for DryadLab includes the instructors, and students, of advanced placement, undergrad, and graduate-level evolution courses.
+
The DryadLab interface is styled after the main repository, and integrates closely with the main repository. It uses a slightly different theme than the main repository content, indicating to users that they aren't looking at normal data.
  
 
Items in DryadLab:
 
Items in DryadLab:
* cleaned and simplified data (which link to the original data in Dryad)
+
 
* learning objects (which link to simplified data and/or original data)
+
*cleaned and simplified data (which link to the original data in Dryad)
** teaching guides
+
*learning objects (which link to simplified data and/or original data)
** student material (e.g., worksheets, instructions)
+
**teaching guide
** descriptions of appropriate analysis tools and techniques
+
**student material (e.g., worksheets, instructions)
 +
**documentation on analysis tools and techniques
 +
**links to online software or other tools
  
 
Items in Dryad:
 
Items in Dryad:
* raw research data
 
* links between raw data and articles
 
 
Items outside the repository:
 
* blogs
 
* fancy interactive tools
 
* student projects and portfolios
 
* teacher forums
 
  
=== Collection Policy ===
+
*originally published dataset
 +
*link to published article
  
To be included in DryadLab, each Package must include at least one activity that uses real (or massaged) data from a scientific data archive.
+
Not included:
  
== Potential Targets ==
+
*blogs, fancy interactive online tools, student projects and portfolios, teacher forums
  
Recent high-profile evolution papers, (e.g. those prioritized by the SELECTION working group, highly-cited papers from Dryad Partner journals)
+
== Target Datasets<br/> ==
* add list here
 
  
Data identified by the TREE working group
+
#Popular Dryad datasets (based on downloads or citations), particularly those arising from NESCent sponsored scientists (e.g. the educator's resource for the Body Size database)
* [[BIRDD]]
+
#Datasets of high pedagogical value, such as those prioritized by past NESCent education working groups.
** Partially [http://hdl.handle.net/10255/dryad.148 in Dryad] already
 
** much educational material already prepared
 
  
Data arising from NESCent sponsored scientists
+
== Modules ==
* educator's resource for the Body Size database
 
** The [http://bodysize.nescent.org/ BodySize database] is separate from Dryad, but a snapshot is [http://hdl.handle.net/10255/dryad.223 in Dryad].
 
  
== Technology ==
+
=== A Walk Through the Woods: Data Analysis of Structural Adaptations in Wood ===
  
There will be web content surrounding the educational content, but the typical educational content will be stored in DSpace. The structure will be similar to research data, with a data package and data files for each educational component. Educational packages may contain data files from the research collection, and educational data files may include a "derived from" link to data files in the research collection.
+
Students will use an authentic data set from Dryad Digital Repository to explore whether evolutionary tradeoffs actually occur in plants and whether evolution has led to tissue distributions that match predictions about efficiency and safety. Students will 1) form hypotheses about the influence of environmental variables on wood structure, 2) test their hypotheses using wood structure data, 3) interpret their results in light of environmental pressures and physiological function, and 4) revise hypotheses as necessary. Students will be able generate a hypothesis, examine a data set, select the appropriate data to test their hypothesis, visualize these data, and evaluate their hypothesis based on the results. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities.
  
We will not discourage people from building educational resources that are external to Dryad (linking to Dryad content). These external resources may contain materials and activities that are beyond the scope of DryadLab.
+
*Instruction Level: Introductory and advanced undergraduate biology courses, AP high school biology
 +
*Keywords: hypothesis formulation, hypothesis testing, data visualization, graphing, adaptation, environmental pressures, wood structure and function, ecology, botany, forestry, climate change
 +
*[http://datadryad.org/handle/10255/dryad.40383 Download / More about this module]
  
Versioning will be performed on DryadLab content the same way as for regular Dryad content.
+
=== Survivorship in the Natural World ===
  
There will be a search system that searches only over DryadLab content (e.g., DSpace collection-level search)
+
Students will compare idealized survivorship curves with actual survivorship curves through the examination and manipulation of an authentic dataset from the Dryad Digital Repository, allowing students to wrestle with questions about whether or not real data yield results that look like classic models. Students are then able to compare those survivorship curves to age pyramids and life histories. At completion of the module, students will understand that while idealized models have value, they do not represent the real world. Additionally, students will have the opportunity to create and manage data files, and will be able to put data into a more easily accessible form. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities.
  
Content in DryadLab will receive DOIs, as long as this is ok with CDL.
+
*Instruction Level: Undergraduate (Intro Biology or Intro Ecology), AP Biology
 +
*Keywords: survivorship, life history, population ecology, demography, life tables, age structure
 +
*[http://datadryad.org/handle/10255/dryad.40382 Download / More about this module]
  
We will allow commenting on DryadLab content, but the comments themselves may be routed through an external site like Merlot.
+
=== Staying Alive: Introduction to Extinction and Extinction Bias ===
  
=== Item display ===
+
Students will be introduced to different factors that affect extinction risk and will work with an authentic data set on artiodactyls from Dryad Digital Repository to ask their own questions, develop hypotheses and use data to answer those questions. At completion of the module, students will understand that hypotheses are tested by figuring out what expectations are generated by that hypothesis, and making observations to find out whether those expectations are borne out. They will be able to examine a large data set, select the appropriate data, visualize data by making candlestick plots and look for patterns in these data. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities. The module emphasizes the fact that science is an ongoing process and that investigating one scientific question frequently leads to additional questions.
  
Information displayed on a Package page will include:
+
*Instruction Level: Intro level undergrad biology, AP high school, high school
* Title
+
*Keywords: extinction, data analysis, graphing, macroevolution, ecology, conservation
* Overview (1-line description: Activities on the topic of X suitable for audience Y)
+
*[http://datadryad.org/handle/10255/dryad.40384 Download / More about this module]
* Keywords
 
* Concepts covered and learning outcomes?
 
* Description of each Activity (1-paragraph description: Data comes from Z and covers topics W. Contains V resources of type U.)
 
* Links to external resources
 
* Links to extra background information at Understanding Evolution.
 
  
Information displayed on an Activity page will include:
+
== Technology ==
* Title
 
* Author
 
* Grade Level
 
* Concepts covered and learning outcomes
 
* Time required
 
* Overview
 
* Teaching tips?
 
* full (HTML) text of the activity
 
* link to download PDF of the activity
 
* links to download resources (in Dryad, in DryadLab, external)
 
* Links to external resources
 
* Comments (link to Merlot? or stored in DryadLab?)
 
 
 
=== BIRDD is a special case ===
 
  
We will not have many educational items with the scale of BIRDD. The educational resources for BIRDD will be placed on the NESCent EOG site, and link to content in Dryad.
+
See [[DryadLab Technology]].
  
=== Handshaking ===
+
== Funding ==
  
When new packages are published in DryadLab, notifications/copies will be posted at:
+
The development of DryadLab was supported through the education and outreach program of the National Evolutionary Synthesis Center and by the Quantitative Undergraduate Biology Education and Synthesis project, with funding from National Science Foundation grants DBI-0743720, EF-0905606, DBI 1346584, DUE 1446269, DUE 1446258, and DUE 1446284. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the funder(s).
* Merlot
 
* NSDL
 
* Understanding Evolution
 
  
== Relevant Portions of the Grant Proposal ==
+
=== Relevant Portions of the Grant Proposal ===
  
* "Datasets of special educational value will be targeted and developed for classroom use through a dedicated education section of the repository."
+
*"Datasets of special educational value will be targeted and developed for classroom use through a dedicated education section of the repository."
* "We will also promote the use of Dryad as an educational tool to teach future scientists about the value of digital data archives."
+
*"We will also promote the use of Dryad as an educational tool to teach future scientists about the value of digital data archives."
* "Datasets of special educational value will receive extra curatorial attention and be presented for student use through a dedicated education section of the repository, acclimating future investigators to a scientific culture in which digitally shared data will play an increasingly important role."
+
*"Datasets of special educational value will receive extra curatorial attention and be presented for student use through a dedicated education section of the repository, acclimating future investigators to a scientific culture in which digitally shared data will play an increasingly important role."
* "The curators will also target a limited number datasets of special data packages (i.e. those that are frequently downloaded by users, or those that are particularly suitable for educational purposes) for a higher-level of curatorial attention"
+
*"The curators will also target a limited number datasets of special data packages (i.e. those that are frequently downloaded by users, or those that are particularly suitable for educational purposes) for a higher-level of curatorial attention"
* "DryEd will contain specially prepared datasets designed for student investigations into different aspects of evolutionary biology. Data curators will select a limited number of datasets (1-2 per year) to receive extra curatorial attention, based on popularity or thematic area. Preference will be given to datasets likely to have strong resonance with students (on topics such as the evolution of antibiotic resistance or viral pathogenicity, domestication of companion animals, human origins, origin of life, etc). Curators will work with authors, and with the NESCent Education and Outreach Group, to provide detailed metadata, more extensive background and related material, and a set of suggested exercises appropriate for each dataset. Resources will be targeted at the Advanced Placement, college, and graduate levels. Multiple routes of dissemination will be pursued through the resources of NESCent’s EOG group (see [76])."
+
*"DryEd will contain specially prepared datasets designed for student investigations into different aspects of evolutionary biology. Data curators will select a limited number of datasets (1-2 per year) to receive extra curatorial attention, based on popularity or thematic area. Preference will be given to datasets likely to have strong resonance with students (on topics such as the evolution of antibiotic resistance or viral pathogenicity, domestication of companion animals, human origins, origin of life, etc). Curators will work with authors, and with the NESCent Education and Outreach Group, to provide detailed metadata, more extensive background and related material, and a set of suggested exercises appropriate for each dataset. Resources will be targeted at the Advanced Placement, college, and graduate levels. Multiple routes of dissemination will be pursued through the resources of NESCent’s EOG group (see [76])."
  
 
[[Category:Public Relations]]
 
[[Category:Public Relations]]
 +
[[Category:DryadLab]]

Latest revision as of 11:23, 31 July 2019

Please note: The DryadLab project is no longer active, but the modules can still be downloaded at the links below.

DryadLab is an educational extension of Dryad. It consists of hands-on data analysis learning activities for advanced placement, undergrad, and graduate-level courses based on data within the repository. The activities were developed as a collaboration between researchers and educators, and tested by educators in the classroom.

Basic Organization

The DryadLab interface is styled after the main repository, and integrates closely with the main repository. It uses a slightly different theme than the main repository content, indicating to users that they aren't looking at normal data.

Items in DryadLab:

  • cleaned and simplified data (which link to the original data in Dryad)
  • learning objects (which link to simplified data and/or original data)
    • teaching guide
    • student material (e.g., worksheets, instructions)
    • documentation on analysis tools and techniques
    • links to online software or other tools

Items in Dryad:

  • originally published dataset
  • link to published article

Not included:

  • blogs, fancy interactive online tools, student projects and portfolios, teacher forums

Target Datasets

  1. Popular Dryad datasets (based on downloads or citations), particularly those arising from NESCent sponsored scientists (e.g. the educator's resource for the Body Size database)
  2. Datasets of high pedagogical value, such as those prioritized by past NESCent education working groups.

Modules

A Walk Through the Woods: Data Analysis of Structural Adaptations in Wood

Students will use an authentic data set from Dryad Digital Repository to explore whether evolutionary tradeoffs actually occur in plants and whether evolution has led to tissue distributions that match predictions about efficiency and safety. Students will 1) form hypotheses about the influence of environmental variables on wood structure, 2) test their hypotheses using wood structure data, 3) interpret their results in light of environmental pressures and physiological function, and 4) revise hypotheses as necessary. Students will be able generate a hypothesis, examine a data set, select the appropriate data to test their hypothesis, visualize these data, and evaluate their hypothesis based on the results. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities.

  • Instruction Level: Introductory and advanced undergraduate biology courses, AP high school biology
  • Keywords: hypothesis formulation, hypothesis testing, data visualization, graphing, adaptation, environmental pressures, wood structure and function, ecology, botany, forestry, climate change
  • Download / More about this module

Survivorship in the Natural World

Students will compare idealized survivorship curves with actual survivorship curves through the examination and manipulation of an authentic dataset from the Dryad Digital Repository, allowing students to wrestle with questions about whether or not real data yield results that look like classic models. Students are then able to compare those survivorship curves to age pyramids and life histories. At completion of the module, students will understand that while idealized models have value, they do not represent the real world. Additionally, students will have the opportunity to create and manage data files, and will be able to put data into a more easily accessible form. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities.

  • Instruction Level: Undergraduate (Intro Biology or Intro Ecology), AP Biology
  • Keywords: survivorship, life history, population ecology, demography, life tables, age structure
  • Download / More about this module

Staying Alive: Introduction to Extinction and Extinction Bias

Students will be introduced to different factors that affect extinction risk and will work with an authentic data set on artiodactyls from Dryad Digital Repository to ask their own questions, develop hypotheses and use data to answer those questions. At completion of the module, students will understand that hypotheses are tested by figuring out what expectations are generated by that hypothesis, and making observations to find out whether those expectations are borne out. They will be able to examine a large data set, select the appropriate data, visualize data by making candlestick plots and look for patterns in these data. The module contains scaffolding, and can be customized to meet the needs of students of varying abilities. The module emphasizes the fact that science is an ongoing process and that investigating one scientific question frequently leads to additional questions.

  • Instruction Level: Intro level undergrad biology, AP high school, high school
  • Keywords: extinction, data analysis, graphing, macroevolution, ecology, conservation
  • Download / More about this module

Technology

See DryadLab Technology.

Funding

The development of DryadLab was supported through the education and outreach program of the National Evolutionary Synthesis Center and by the Quantitative Undergraduate Biology Education and Synthesis project, with funding from National Science Foundation grants DBI-0743720, EF-0905606, DBI 1346584, DUE 1446269, DUE 1446258, and DUE 1446284. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the funder(s).

Relevant Portions of the Grant Proposal

  • "Datasets of special educational value will be targeted and developed for classroom use through a dedicated education section of the repository."
  • "We will also promote the use of Dryad as an educational tool to teach future scientists about the value of digital data archives."
  • "Datasets of special educational value will receive extra curatorial attention and be presented for student use through a dedicated education section of the repository, acclimating future investigators to a scientific culture in which digitally shared data will play an increasingly important role."
  • "The curators will also target a limited number datasets of special data packages (i.e. those that are frequently downloaded by users, or those that are particularly suitable for educational purposes) for a higher-level of curatorial attention"
  • "DryEd will contain specially prepared datasets designed for student investigations into different aspects of evolutionary biology. Data curators will select a limited number of datasets (1-2 per year) to receive extra curatorial attention, based on popularity or thematic area. Preference will be given to datasets likely to have strong resonance with students (on topics such as the evolution of antibiotic resistance or viral pathogenicity, domestication of companion animals, human origins, origin of life, etc). Curators will work with authors, and with the NESCent Education and Outreach Group, to provide detailed metadata, more extensive background and related material, and a set of suggested exercises appropriate for each dataset. Resources will be targeted at the Advanced Placement, college, and graduate levels. Multiple routes of dissemination will be pursued through the resources of NESCent’s EOG group (see [76])."