Difference between revisions of "Journal instructions"

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We recommend that journals provide explicit guidance to authors regarding data availability and data citation in order to promote best practice, including:
 
We recommend that journals provide explicit guidance to authors regarding data availability and data citation in order to promote best practice, including:
  
# In the instructions to authors, name relevant repositories (incl. Dryad) for different datatypes, and/or describe criteria for allowable repositories such as public access, terms of reuse, guarantee of preservation, metadata standards, and community adoption.
+
=== Identify relevant repositories ===
#* Where it is named, please provide a link to the Dryad repository URL, http://www.datadryad.org/
 
#* For integrated journals, please let authors know when and how integrated data submission to Dryad will occur.
 
# Include data identifiers and data citations in all forms of the final article.
 
#* Dryad suggests, following [http://blogs.biomedcentral.com/gigablog/2012/12/21/promoting-datacitation-in-nature/ BioMed Central] recommendations, that the '''DOI be included as an in-text citation, and additionally that the full data citation be listed in the reference section of the article.'''
 
#* Example of data DOI in article text (the full URL is preferred over the shortened form of the DOI):
 
#** Data available from the Dryad Digital Repository: http://dx.doi.org/10.5061/dryad.NNNN
 
#* Example of data citation to be included in references:
 
#** Sadd BM (2011) Data from: Food-environment mediates the outcome of specific interactions between a bumblebee and its trypanosome parasite. Dryad Digital Repository. http://doi.org/10.5061/dryad.t903h
 
#Links to sample journal articles illustrating data citation formats:
 
#*[http://dx.doi.org/10.1007/s11557-011-0800-z Article with links to Dryad data in Materials and Methods, Figures, and Reference List]
 
  
== Examples of journal data policies==
+
In the instructions to authors, describe criteria for allowable repositories such as public access, terms of reuse (licensing), guarantee of archival preservation, metadata standards, and community adoption, and name relevant repositories (incl. Dryad) for different datatypes.
 +
 
 +
*Where it is named, please provide a link to the Dryad repository URL, [http://www.datadryad.org/ http://www.datadryad.org/]
 +
*For integrated journals, please let authors know when and how integrated data submission to Dryad will occur.
 +
 
 +
=== Include data identifiers and data citations in all forms of the final article ===
 +
 
 +
Dryad suggests, following [http://blogs.biomedcentral.com/gigablog/2012/12/21/promoting-datacitation-in-nature/ BioMed Central] recommendations, that the '''DOI be included as an in-text citation, and additionally that the full data citation be listed in the reference section of the article.'''
 +
*Example of data DOI in article text (the full URL is preferred over the shortened form of the DOI):
 +
**Data available from the Dryad Digital Repository: [http://doi.org/10.5061/dryad.t903h http://doi.org/10.5061/dryad.t903h]
 +
*Example of data citation to be included in references:
 +
**Sadd BM (2011) Data from: Food-environment mediates the outcome of specific interactions between a bumblebee and its trypanosome parasite. Dryad Digital Repository. [http://doi.org/10.5061/dryad.t903h http://doi.org/10.5061/dryad.t903h]
 +
 
 +
Best practices resources for journals:
 +
*Cousijn H, et al: A Data Citation Roadmap for Scientific Publishers - [https://doi.org/10.1038/sdata.2018.259 https://doi.org/10.1038/sdata.2018.259]
 +
**Presents a practical roadmap for scholarly publishers to implement data citation in accordance with the [https://www.force11.org/group/joint-declaration-data-citation-principles-final Joint Declaration of Data Citation Principles (JDDCP)]
 +
*[https://cos.io/our-services/top-guidelines/ Transparency and Openness Promotion Guidelines] from the Center for Open Science
 +
*[https://www.force11.org/sites/default/files/d7/project/882/citing-data-in-jats-2015-06.pdf Citing Data in Journal Articles using JATS] (Journal Article Tag Suite)
 +
 
 +
=== Links to sample journal articles illustrating different data citation locations and formats ===
 +
 
 +
*[http://dx.doi.org/10.1098/rsos.160738 Article with link to Dryad via banner widget in Figures & Data tab, Data Accessibility statement, and Reference List]
 +
**See more about [http://wiki.datadryad.org/Widgets_For_Journals journal widget options]
 +
*[http://dx.doi.org/10.1007/s11557-011-0800-z Article with links to Dryad data in Materials and Methods, Figures, and Reference List]
 +
*[http://dx.doi.org/10.1371/journal.pone.0077467 Article with link to Dryad data in Materials and Methods]
 +
*[http://dx.doi.org/10.1111/pala.12281 Article with link to Dryad via Data Availability statement above abstract]
 +
*[http://dx.doi.org/10.1111/mec.12379 Article with Dryad data link in Data Accessibility statement]
 +
*[http://dx.doi.org/10.1086/665653 Article with Dryad link in header]
 +
*[http://dx.doi.org/10.1111/bij.12093 Article with links to Dryad data in Data Accessibility statement and References]
 +
*[http://dx.doi.org/10.1890/11-1014.1 Article with link to Dryad data in Data Accessibility statement at end of Appendices]
 +
 
 +
== Examples of journal data policies ==
  
 
The Joint Data Archiving Policy (JDAP) requires that supporting data be publicly available. This policy was adopted in a joint and coordinated fashion by many leading journals in the field of evolution in 2011, and JDAP has since been adopted by other journals across various disciplines. Additional journals are welcome to endorse and implement JDAP, or use it as a model.
 
The Joint Data Archiving Policy (JDAP) requires that supporting data be publicly available. This policy was adopted in a joint and coordinated fashion by many leading journals in the field of evolution in 2011, and JDAP has since been adopted by other journals across various disciplines. Additional journals are welcome to endorse and implement JDAP, or use it as a model.
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Journals that adopt JDAP often recommend Dryad as an appropriate data repository, however the JDAP initiative is distinct from Dryad.
 
Journals that adopt JDAP often recommend Dryad as an appropriate data repository, however the JDAP initiative is distinct from Dryad.
  
* [http://www.datadryad.org/jdap '''Joint Data Archiving Policy'''].
+
*[http://www.datadryad.org/jdap <b>Joint Data Archiving Policy</b>].
 +
 
 +
Springer Nature has defined a [http://www.springernature.com/gp/authors/research-data-policy/data-policy-types/12327096 flexible set of journal data policies] available for reuse by the research data community.
 +
 
 +
=== Representative list of journals that require data archiving ===
 +
 
 +
''*list is not comprehensive or actively maintained''
  
 +
*[http://www.journals.uchicago.edu/page/an/instruct.html#data The American Naturalist]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1095-8312/homepage/ForAuthors.html Biological Journal of the Linnean Society]
 +
*[http://rsbl.royalsocietypublishing.org/site/misc/styleandpolicy.xhtml#question10 Biology Letters]
 +
*[http://www.biomedcentral.com/bmcecol/authors/instructions/researcharticle BMC Ecology]
 +
*[http://www.biomedcentral.com/bmcevolbiol/authors/instructions/researcharticle BMC Evolutionary Biology]
 +
*[http://bmjopen.bmj.com/site/about/resources/datamanagement.xhtml BMJ Open]
 +
*[http://esapubs.org/esapubs/DataReg.htm Ecological Applications and&nbsp;][http://esapubs.org/esapubs/emonTypes.htm#Dat Ecological Monographs]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291558-5646/homepage/ForAuthors.html Evolution]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291752-4571/homepage/ForAuthors.html#section5 Evolutionary Applications]
 +
*[http://www.functionalecology.org/view/0/authorGuideline.html#Data Functional Ecology]
 +
*[http://www.genetics.org/site/misc/ifora.xhtml#DATA_AND_REAGENT_POLICY Genetics]
 +
*[http://mts-hdy.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions#datapolicy Heredity]
 +
*[http://www.journalofappliedecology.org/view/0/authorGuideline.html#dataarchiving Journal of Applied Ecology]
 +
*[http://www.journalofecology.org/view/0/authorGuideline.html#dataarchiving Journal of Ecology]
 +
*[http://www.blackwellpublishing.com/jeb_enhanced/submit.asp Journal of Evolutionary Biology]
 +
*[http://www.fws.gov/science/guideforauthors.html#DataArchiving Journal of Fish and Wildlife Management]
 +
*[http://www.oxfordjournals.org/our_journals/jhered/for_authors/msprep_submission.html#4.%20DATA%20ARCHIVING%20POLICY Journal of Heredity]
 +
*[http://www.journalofpaleontology.org/instructions.htm Journal of Paleontology]
 +
*[http://www.methodsinecologyandevolution.org/view/0/authorGuidelines.html#data_archiving Methods in Ecology and Evolution]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291365-294X/homepage/ForAuthors.html Molecular Ecology]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291755-0998/homepage/ForAuthors.html Molecular Ecology Resources]
 +
*[http://www.nature.com/authors/policies/availability.html#data Nature]
 +
*[http://www.oxfordjournals.org/our_journals/nar/for_authors/msprep_submission.html#Data_Deposition_and_Standardization Nucleic Acids Research]
 +
*[http://www.paleosoc.org/content/AuthorContribInstr.html Paleobiology]
 +
*[http://www.plosone.org/static/policies#sharing PLOS]
 +
*[http://www.sciencemag.org/site/feature/contribinfo/prep/gen_info.xhtml#dataavail Science]
 +
*[http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
  
These journals have varied policies about data availability which reference the Dryad repository.
+
=== Representative list of journals with varied policies about data availability which reference the Dryad repository ===
  
* [http://www.journals.uchicago.edu/page/an/instruct.html#data The American Naturalist]
+
''*list is not comprehensive or actively maintained''
* [http://www.botany.org/apps/APPS_Author_Instructions.html#9DataAccess Applications in Plant Sciences]
 
* [http://rsbl.royalsocietypublishing.org/site/misc/styleandpolicy.xhtml#question10 Biology Letters]
 
* [http://bmjopen.bmj.com/site/about/resources/datamanagement.xhtml BMJ Open]
 
* [http://www.britishecologicalsociety.org/publications/journal-policies/#data British Ecological Society journals]
 
* [http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291461-0248/homepage/ForAuthors.html#tips18 Ecology Letters]
 
* [http://esapubs.org/esapubs/emonTypes.htm#Dat Ecological Monographs]
 
* [http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758/homepage/ForAuthors.html Ecology and Evolution]
 
* [http://home.elementascience.org/for-authors/supplemental-material-and-data/#deposit-of-primary-data Elementa: Science of the Anthropocene]
 
* [http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291558-5646/homepage/ForAuthors.html Evolution]
 
* [http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291752-4571/homepage/ForAuthors.html#section5 Evolutionary Applications]
 
* [http://www.functionalecology.org/view/0/authorGuideline.html#Data Functional Ecology]
 
* [http://www.egms.de/static/en/journals/gms/authors.htm#guide GMS German Medical Science]
 
* [http://mts-hdy.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions#datapolicy Heredity]
 
* [http://www.hljournals.org/userimages/ContentEditor/1277404755367/HL-Instructions-for-Authors.pdf Herpetologica and Herpetological Monographs]
 
* [http://jcs.biologists.org/site/journal/editorial_policies.xhtml#refs Journal of Cell Science]
 
* [http://www.blackwellpublishing.com/jeb_enhanced/submit.asp Journal of Evolutionary Biology]
 
* [http://www.fws.gov/science/guideforauthors.html#DataArchiving Journal of Fish and Wildlife Management]
 
* [http://www.oxfordjournals.org/our_journals/jhered/for_authors/msprep_submission.html#4.%20DATA%20ARCHIVING%20POLICY Journal of Heredity]
 
* [http://www.journalofpaleontology.org/instructions.htm Journal of Paleontology]
 
* [http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291365-294X/homepage/ForAuthors.html Molecular Ecology]
 
* [http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291755-0998/homepage/ForAuthors.html Molecular Ecology Resources]
 
* [http://www.nature.com/authors/editorial_policies/availability.html Nature Publishing Group]
 
* [http://www.fws.gov/science/nafguideforauthors.html#DataArchiving North American Fauna]
 
* [http://openheart.bmj.com/site/about/resources-authors.xhtml Open Heart]
 
* [http://www.paleosoc.org/content/AuthorContribInstr.html Paleobiology]
 
* [http://peerj.com/about/policies-and-procedures/#data-materials-sharing PeerJ]
 
* [http://www.plosbiology.org/static/dryad.action PLOS Biology]
 
* [http://www.ploscompbiol.org/static/guidelines.action#accessionnumbers PLOS Computational Biology]
 
* [http://www.plosgenetics.org/static/static/policies.action#sharing PLOS Genetics]
 
* [http://www.plosntds.org/static/guidelines.action#accessionnumbers PLOS Neglected Tropical Diseases]
 
* [http://www.plosone.org/static/editorial#sharing PLOS ONE]
 
* [http://www.plospathogens.org/static/policies.action#sharing PLOS Pathogens]
 
* [http://rspb.royalsocietypublishing.org/site/misc/preparing-article.xhtml#question10 Proceedings B]
 
* [http://royalsocietypublishing.org/data-sharing Royal Society Publishing]
 
* [http://www.nature.com/scientificdata/for-authors/editorial-policies/#data-deposition Scientific Data]
 
* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
 
  
[[Category:Public Relations]]
+
*[http://www.journals.uchicago.edu/page/an/instruct.html#data The American Naturalist]
[[Category:Journals]]
+
*[http://www.botany.org/apps/APPS_Author_Instructions.html#9DataAccess Applications in Plant Sciences]
 +
*[http://rsbl.royalsocietypublishing.org/site/misc/styleandpolicy.xhtml#question10 Biology Letters]
 +
*[http://www.biomedcentral.com/bmcecol/authors/instructions/researcharticle BMC Ecology]
 +
*[http://bmjopen.bmj.com/site/about/resources/datamanagement.xhtml BMJ Open]
 +
*[http://www.britishecologicalsociety.org/publications/journal-policies/#data British Ecological Society journals]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291461-0248/homepage/ForAuthors.html#tips18 Ecology Letters]
 +
*[http://esapubs.org/esapubs/emonTypes.htm#Dat Ecological Monographs]
 +
*[http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292045-7758/homepage/ForAuthors.html Ecology and Evolution]
 +
*[http://home.elementascience.org/for-authors/supplemental-material-and-data/#deposit-of-primary-data Elementa: Science of the Anthropocene]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291558-5646/homepage/ForAuthors.html Evolution]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291752-4571/homepage/ForAuthors.html#section5 Evolutionary Applications]
 +
*[http://www.functionalecology.org/view/0/authorGuideline.html#Data Functional Ecology]
 +
*[http://www.egms.de/static/en/journals/gms/authors.htm#guide GMS German Medical Science]
 +
*[http://mts-hdy.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions#datapolicy Heredity]
 +
*[http://www.hljournals.org/userimages/ContentEditor/1277404755367/HL-Instructions-for-Authors.pdf Herpetologica and Herpetological Monographs]
 +
*[http://jcs.biologists.org/site/journal/editorial_policies.xhtml#refs Journal of Cell Science]
 +
*[http://www.blackwellpublishing.com/jeb_enhanced/submit.asp Journal of Evolutionary Biology]
 +
*[http://www.fws.gov/science/guideforauthors.html#DataArchiving Journal of Fish and Wildlife Management]
 +
*[http://www.oxfordjournals.org/our_journals/jhered/for_authors/msprep_submission.html#4.%20DATA%20ARCHIVING%20POLICY Journal of Heredity]
 +
*[http://www.journalofpaleontology.org/instructions.htm Journal of Paleontology]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291365-294X/homepage/ForAuthors.html Molecular Ecology]
 +
*[http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291755-0998/homepage/ForAuthors.html Molecular Ecology Resources]
 +
*[http://www.nature.com/authors/editorial_policies/availability.html Nature Publishing Group]
 +
*[http://www.fws.gov/science/nafguideforauthors.html#DataArchiving North American Fauna]
 +
*[http://openheart.bmj.com/site/about/resources-authors.xhtml Open Heart]
 +
*[http://www.paleosoc.org/content/AuthorContribInstr.html Paleobiology]
 +
*[http://peerj.com/about/policies-and-procedures/#data-materials-sharing PeerJ]
 +
*[http://www.plosbiology.org/static/dryad.action PLOS Biology]
 +
*[http://www.ploscompbiol.org/static/guidelines.action#accessionnumbers PLOS Computational Biology]
 +
*[http://www.plosgenetics.org/static/static/policies.action#sharing PLOS Genetics]
 +
*[http://www.plosntds.org/static/guidelines.action#accessionnumbers PLOS Neglected Tropical Diseases]
 +
*[http://www.plosone.org/static/editorial#sharing PLOS ONE]
 +
*[http://www.plospathogens.org/static/policies.action#sharing PLOS Pathogens]
 +
*[http://rspb.royalsocietypublishing.org/site/misc/preparing-article.xhtml#question10 Proceedings B]
 +
*[http://royalsocietypublishing.org/data-sharing Royal Society Publishing]
 +
*[http://www.nature.com/scientificdata/for-authors/editorial-policies/#data-deposition Scientific Data]
 +
*[http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]

Latest revision as of 12:49, 26 November 2018

This page collects examples of journal instructions to authors that refer to Dryad, as well as journal policies about data availability, and suggests the critical elements for citations to data in Dryad.

Elements of journal data policy

We recommend that journals provide explicit guidance to authors regarding data availability and data citation in order to promote best practice, including:

Identify relevant repositories

In the instructions to authors, describe criteria for allowable repositories such as public access, terms of reuse (licensing), guarantee of archival preservation, metadata standards, and community adoption, and name relevant repositories (incl. Dryad) for different datatypes.

  • Where it is named, please provide a link to the Dryad repository URL, http://www.datadryad.org/
  • For integrated journals, please let authors know when and how integrated data submission to Dryad will occur.

Include data identifiers and data citations in all forms of the final article

Dryad suggests, following BioMed Central recommendations, that the DOI be included as an in-text citation, and additionally that the full data citation be listed in the reference section of the article.

  • Example of data DOI in article text (the full URL is preferred over the shortened form of the DOI):
  • Example of data citation to be included in references:
    • Sadd BM (2011) Data from: Food-environment mediates the outcome of specific interactions between a bumblebee and its trypanosome parasite. Dryad Digital Repository. http://doi.org/10.5061/dryad.t903h

Best practices resources for journals:

Links to sample journal articles illustrating different data citation locations and formats

Examples of journal data policies

The Joint Data Archiving Policy (JDAP) requires that supporting data be publicly available. This policy was adopted in a joint and coordinated fashion by many leading journals in the field of evolution in 2011, and JDAP has since been adopted by other journals across various disciplines. Additional journals are welcome to endorse and implement JDAP, or use it as a model.

Journals that adopt JDAP often recommend Dryad as an appropriate data repository, however the JDAP initiative is distinct from Dryad.

Springer Nature has defined a flexible set of journal data policies available for reuse by the research data community.

Representative list of journals that require data archiving

*list is not comprehensive or actively maintained

Representative list of journals with varied policies about data availability which reference the Dryad repository

*list is not comprehensive or actively maintained