Difference between revisions of "Publications"

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== Essential publications ==
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== Recommended reading ==
  
 
# Piwowar, HA, Vision, TJ, & Whitlock, MC (2011). Data archiving is a good investment. Nature, 473 (7347), 285-285  [http://dx.doi.org/10.1038/473285a doi: 10.1038/473285a]
 
# Piwowar, HA, Vision, TJ, & Whitlock, MC (2011). Data archiving is a good investment. Nature, 473 (7347), 285-285  [http://dx.doi.org/10.1038/473285a doi: 10.1038/473285a]

Revision as of 06:36, 31 July 2012

Recommended reading

  1. Piwowar, HA, Vision, TJ, & Whitlock, MC (2011). Data archiving is a good investment. Nature, 473 (7347), 285-285 doi: 10.1038/473285a
  2. Vision, TJ. (2010) Open Data and the Social Contract of Scientific Publishing. BioScience 60(5):330-330. doi:10.1525/bio.2010.60.5.2
  3. Vision, TJ. Coupling Research Data to Publications in the Life Sciences. ICSTI Delivering Data in Science workshop Paris, France, Mar. 5, 2012. (slides)

Papers

  1. Willis, C., Greenberg, J., White, H. (2012). Analysis and Synthesis of Metadata Goals for Scientific Data. Journal of the American Society for Information Science and Technology. Forthcoming.
  2. Greenberg, J. Losee, R., Aguera, J., Scherle, R., White, H., and Willis, C. (2010). HIVE: Helping interdisciplinary vocabulary engineering. Bulletin of the American Society for Information Science and Technology 37(4). (available online)
  3. Greenberg, J. (2010). Metadata for Scientific Data: Historical Considerations, Current Practices, and Prospects. Journal of Library Metadata, 10(2/3): 75-78. doi:10.1080/19386389.2010.520262
  4. White, H. (2010) Considering Personal Organization: Metadata Practices of Scientists. Journal of Library Metadata, 10 (2/3). doi:10.1080/19386389.2010.506396
  5. Vision, T.J. (2010) Open Data and the Social Contract of Scientific Publishing. BioScience 60(5):330-330. doi:10.1525/bio.2010.60.5.2
  6. Greenberg, J., White, H., C, Carrier, C. and Scherle, R. (2009). A Metadata Best Practice for a Scientific Data Repository. Journal of Library Metadata, 9:3, 194—212. doi:10.1080/19386380903405090 NOTE: the published article is freely available via the DOI, it just take a several seconds to connect to the Francis and Taylor website. You should be able to download a PDF copy of this article, easily, once you get there. If you have problems, see this draft of the article.
  7. Greenberg, J. (2009). Theoretical Considerations of Lifecycle Modeling: An Analysis of the Dryad Repository Demonstrating Automatic Metadata Propagation, Inheritance, and Value System Adoption. Cataloging & Classification Quarterly(47, no.3): 380-402. doi:10.1080/01639370902737547. 2010 Jesse H. Shera Award for Distinguished Published Research (Draft PDF)

Conference Papers

  1. Scherle, R., & Diggory, M. (2012) Creating Citable Data Identifiers. International Conference on Open Repositories.
  2. Michener et al. (2011) DataONE: Data Observation Network for Earth — Preserving Data and Enabling Innovation in the Biological and Environmental Sciences, D-Lib Magazine 17(1/2), from a presentation at the DataCite Summer Meeting, Hanover, Germany, 7-8 June 2010
  3. Vision TJ. The Dryad Digital Repository: Published evolutionary data as part of the greater data ecosystem. iEvoBio, Portland OR, June 2010.
  4. Beagrie, N., Eakin-Richards, L., and Vision, T. Business Models and Cost Estimation: Dryad Repository Case Study, iPRES2010 Vienna, September 2010.
  5. Pérez-Agüera, J., Arroyo, J., Greenberg, J., Perez-Iglesias, J., and Fresno, V. Using BM25F for Semantic Search. Semantic Search Workshop at the 19th Int. World Wide Web Conference WWW2010 April 26, 2010, Raleigh, NC, USA..  10.1145/1863879.1863881.  SEMSEARCH '10 Best Paper Award (PDF)
  6. Greenberg, J. (2009). Theories of Evolution and Cultural Diffusion: The Dryad Repository Case Study for Understanding Changes in Organizing Information Practices. iSchool Conference, Chapel Hill, NC, February 9, 2009. (Paper in Word format)
  7. White, H. Carrier, S., Thompson, A., Greenberg, J., & Scherle, R. (2008) The Dryad Data Repository: A Singapore Framework Metadata Architecture in a DSpace Environment. In DC 2008, the 2008 International Conference on Dublin Core and Metadata Applications, Berlin. (PDF)
  8. Carrier, S., Dube, J., & Greenberg, J. (2007). The DRIADE Project: Phased Application Profile Development in Support of Open Science. In DC-2007: Application Profiles: Theory and Practice. International Conference on Dublin Core and Metadata Applications, Singapore, August 27-31, 2007, pp. 35-42. (PDF)

Posters

  1. White, H., Willis, C., Greenberg, J. (2012) The HIVE impact: contributing to consistency via automatic indexing. iConference 2012. Toronto, ON, Canada. Poster
  2. Greenberg, J., Lapp, H., Scherle, R., Vision, T., White, H., Carrier, S., and Schaeffer, P. (2009) The Dryad Repository: Designing a Curation Workflow. 5th International Digital Curation Conference, London, UK. December 2009. (Abstract, and Poster)
  3. Scherle, R., Bapat, A., Carrier, S., Greenberg, J., Lapp, H., Schaeffer, P., Vision, T., & White, H. (2009) Dryad: a digital repository of data from publications in evolutionary biology and ecology. In Evolution 2009, Moscow, Idaho. (Poster PPT)
  4. Scherle, R., Lapp, H., Bapat, A., Carrier, S., Greenberg, J., Schaeffer, P., Vision, T., & White, H. (2009) The Dryad Data Repository. In the 2009 The International Conference on Biodiversity Informatics, London. (Abstract, Poster PPT, Poster PDF)
  5. White, H. (2008) Exploring Evolutionary Biologists' Use and Perceptions of Semantic Metadata for Data Curation. In DC 2008, the 2008 International Conference on Dublin Core and Metadata Applications, Berlin. (Abstract, Poster)
  6. Scherle, R., Carrier, S., Greenberg, J., Lapp, H., Thompson, A., Vision, T., & White, H. (2008) Building Support for a Discipline-Based Data Repository. In Proceedings of the 2008 International Conference on Open Repositories. (Extended Abstract, Poster PDF, Poster PPT)
  7. Dube, J., Carrier, S., & Greenberg, J. (2007) DRIADE: A Data Repository for Evolutionary Biology. In Proceedings of the 2007 Joint Conference on Digital Libraries. p.481, ACM Press, Vancouver, BC, Canada. (Abstract, Poster PPT)
  8. Carrier, S., Dube, J. Greenberg, J., Lapp, H., Thompson, H., Vision, T., & White, H. (2007) The Dryad Repository: Transforming Scientific Publishing and Data Discovery Via the Convergence of Open Access and eScience. The 2007 Microsoft eScience Workshop at RENCI, Chapel Hill, USA, 21-23 Oct 2007. (Abstract, Poster)
  9. José R. Pérez-Agüera, Javier Arroyo, Jane Greenberg, Joaquin Perez-Iglesias and Victor Fresno. INEX+DBPEDIA: A corpus for Semantic Search Evaluation. at the 19th Int. World Wide Web Conference WWW2010 April 26, 2010, Raleigh, NC, USA.

Presentations

  1. Greenberg, J. The Dryad Repository. Long-term Stewardship of Scientific Data: Your Library Can Participate in DataONE. LITA Session, ALA Annual Conference, Anaheim, CA, June 24, 2012. (slides)
  2. Luyten, B., Diggory, M., Schaeffer, P. Subject Repositories for Research Data - the Dryad Approach., European Library Automation Group (ELAG) Annual Conference, Mallorca, Spain, May 16, 2012. (slides)
  3. Fitzgerald, R., Dechman, L., Willis, C. (2012). HIVE for LC Web Archives: Web Archives and Automatic Subject Indexing. Presentation given at the International Internet Preservation Consortium 2012 General Assembly, Washington, DC. May 4, 2012. (slides)
  4. Schaeffer, P. Creating a sustainable business model for a digital repository: the Dryad experience. Research Data Access and Preservation Summit, New Orleans, LA, Mar. 22, 2012. (slides, video)
  5. Greenberg, J. Digital Libraries for Research Data. Conferencia Inaugural del Segundo Cuatrimestre, Dpto. de Biblioteconomía y Documentación, Campus de Colmenarejo, Universidad Carlos III de Madrid, Spain, February 13, 2012. (slides)
  6. Vision, T.J. Coupling Research Data to Publications in the Life Sciences. ICSTI Delivering Data in Science workshop Paris, France, Mar. 5, 2012. (slides)
  7. Vision, T. J. Dryad: Scalable Infrastructure for coupling Research Data to Publications in the Life Sciences (video), Academic Publishing in Europe 2012 Berlin, Germany, Jan. 25, 2012.
  8. Greenberg, J. The Dryad Repository. Repositories in Science & Technology: Preserving Access to the Record of Science, CENDI and NFAIS and Hosted by FLICC Library of Congress, November 30, 2011 (slides).
  9. Greenberg J. ALA Annual Conference, June 24-27, 2011 (slides)
  10. Greenberg J. NASKO, Toronto, June 16-17, 2011 (slides)
  11. Piwowar H, iDASH seminar, UC San Diego, June 17th, 2011.
  12. Greenberg J, "Metadata Research: Evolution of a Discipline", Drexel University iSchool, May 9, 2011, abstract
  13. Greenberg J and Vision T, "The Dryad Repository: A New Path for Data Publication in Scholarly Communication", OCLC, April 25, 2011, recorded presentation
  14. Vision T. Introduction to DryadUK sustainability workshop. April 1 2011, The British Library, London UK. slides
  15. Clarke, K. Sharing Between Data Repositories.  Code4Lib 2011 Conference, Feb. 2011. Bloomington, IN. (slides, video -- go to 153 min)
  16. Shotton, D., Peroni, S. Semantic annotation of publication entities using the SPAR (Semantic Publishing and Referencing) Ontologies. Beyond the PDF Workshop, Jan. 2011, La Jolla, CA. (slides)
  17. Vision, T., Scherle, R. The Dryad Digital Data Repository: Coupling the Publication of Scientific Articles and Data. International Digital Curation Conference, December 2010, Chicago, IL. (PDF abstract)
  18. Greenberg, J, Data Curation Research Summit: Panel on Current Directions in Research: Projects and Perspectives, December 2010, Chicago, IL (slides)
  19. Greenberg, J, Willis, C., and White, H. Metadata for Scientific Data: An Analysis Targeting Challenges and Opportunity in Our Global Information Ecology, CODATA, Cape Town, South Africa, October, 2010, (slides)
  20. Vison, T., Lapp, H. The Dryad Digital Repository: published data as part of the greater data ecosystem. ISMB 2010, Boston MA, July 2010. (PDF)
  21. Whitlock, M. Data Archiving in Evolutionary Biology. Evolution 2010, Portland, OR. (PPT)
  22. Neil Beagrie, Dryad and the sustainability of digital repositories (no abstract available), Fourth Bloomsbury Conference on e-publishing, London UK, June 2010.
  23. Michener, W., Kunze, J., Cruse, P., and Scherle, R. The Dryad and DataONE project in the US. DataCite Summer Meeting, Hanover Germany, May 2010. (PPT, Video of Presentation)
  24. Scherle, R. and Aguera, J. HIVE: A New Tool for Working With Vocabularies. Code4Lib conference, Asheville, NC, February 2010. (PPT)
  25. Scherle, R. (2009). The Dryad Data Repository. Duke Repository Community, July 2009. (PPT)
  26. Scherle, R. (2009). Using DSpace as a Disciplinary Data Repository. International Conference on Open Repositories 2009, Atlanta, GA. (Presentation files and a video of the presentation are available at http://hdl.handle.net/1853/28409).
  27. Greenberg, J. (2009). Metadata Research Supporting the Dryad Data Repository. Metadata Working Group Forum. Cornell University Library (Abstract,PDF Slides)
  28. Vision, Todd J. (2009). Scientific Publications, Scientific Data, and the Role of Domain-specific Digital Libraries. UNC Scholarly Communications Working Group. (PDF Slides)
  29. Greenberg, J., Carrier, S., White, H., and Scherle, R. (2009). The Dryad Repository Application Profile: Groundwork Towards a Metadata Scheme for Scientific Data. DigCCurr2009, Chapel Hill, NC, April 2, 2009. (PPT)
  30. Greenberg, J. (2009). Theories of Evolution and Cultural Diffusion: The Dryad Repository Case Study for Understanding Changes in Organizing Information Practices. iSchool Conference, Chapel Hill, NC, February 9, 2009. (PPT)
  31. Greenberg, J. (2008). The DRYAD Repository: Metadata Research and Development. Library of Congress, December 19, 2008. (PDF Slides)
  32. Greenberg, J. (2007). Classifying Scientific Data Objects with Bibliographic Relationship Taxonomies. ASIS&T 2007 Annual Meeting, Oct 2007. (PPT)
  33. Greenberg, J. (2007). Consensus Building and Prioritizing Consensus Building and Prioritizing <Metadata> Development for Project DRIADE: A Case Study. DigCCurr 2007, Chapel Hill, NC, April 18, 2007. (PDF Slides)

Grants

  1. Dryad-UK project: for greater international expansion of Dryad. PI: David Shotton. JISC. Funded for 1 year, starting 2010-10-1. (Dryad-UK project proposal)
  2. DataONE project: for cross-respository collaboration. PI: William Michener. NSF DataNet DBI-0753138. Funded for 5 years, starting 2009-8-1. (DataONE web site)
  3. HIVE project: for enhanced controlled vocabulary features. PI: Jane Greenberg. IMLS LG-07-08-120-08. Funded for 2.5 years, starting 2009-1-1. (HIVE project proposal)
  4. Dryad development project for general Dryad phase 2 development. PI: Kathleen Smith, Todd Vision. NSF DBI-0743720. Funded for 4 years, starting 2008-9-15.(Dryad project proposal)
  5. Virtual Data Center project: for cross-repository collaboration. PI: William Michener. NSF INTEROP DBI-0753138. Funded for 4 years, starting 2008-7-15. (VDC project abstract)

Other

  1. Beagrie, N. et al. (April 2010). Dryad Sustainability Plan: interview survey findings. Report on journal practices and costs for supplementary materials, esp. data.
  2. Greenberg, J. (2009, in press). Metadata and Digital Information. In Marcia J. Bates, Mary Niles Maack, Miriam Drake eds. Encyclopedia of Library and Information Science, New York: Marcel Dekker, Inc. (PDF)
  3. Carrier, S. (2008). The Dryad Repository Application Profile: Process, Development, and Refinement (Master’s Paper, UNC Chapel Hill, 2008). DOI: http://hdl.handle.net/1901/534.
  4. Vision, T., Lapp, H., and Greenberg, J. (2007). Final Report from the Dryad Stakeholder's Workshop.
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