Sample Dryad Content

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Samples of Dryad content with specific properties. These items are often needed to test new functionality, and are useful as models for depositors. Recommendations for authors on what to deposit and general suggestions on data management can be found on the Dryad site here.

A large data file: Brian Sidlauskas's fish jaw image, Laurie Stevenson's sequence alignments, Cossio (2010) PLoS Computational Biology, Geraldes (2011) Molecular Ecology Resources

Package containing many data files: Mike Taylor's paleo package, Janies (2011) Systematic Biology, Gardner (2011) Molecular Ecology Resources with 51 separate fasta formatted files.

Package containing ZIP files with many aggregated files: Chris Zmasek's apoptosis package, Cossio (2010) PLoS Computational Biology, Geraldes (2011) Molecular Ecology Resources

Package with related content in TreeBASE: Sam Price's hunting package, Melo (2011) Molecular Ecology (TB link in article Data Accessibility section)

Package with related content in GenBank: Rocha-Olivares (2011) JHered, Melo (2011) Molecular Ecology (GenBank accession numbers in article Data Accessibility section)

Data packages with a ReadMe file: [1], [2], [3], [4] and with a ReadMe for each data file, [5], [6]

Most popular data package: Global Wood Density Database from Chave J, Coomes D, Jansen S, Lewis SL, Swenson NG, Zanne AE (2009) Towards a worldwide wood economics spectrum. Ecology Letters 12: 351-366.

Data package that is a portion of a larger dataset: Payne

Data packages under embargo: [7], [8]

Data packages with extended embargoes: Meirmans (2011) Molecular Ecology (three years by request of journal editors), Mueller (2011) Evolution (three years by request of journal editors), Mueller (2011) Molecular Ecology (three years by request of journal editors), Dewar (2011) Molecular Ecology (two years by request of journal editors), Rode (2011) Evolution (three years by request of journal editors)

Data packages with non-CC0 licensing: Swenson (2011) Systematic Biology (file consists of code with GNU GPL 3.0 license), Sally Otto's package under Dryad's original license [9], items in the BIRDD collection under Dryad's original license (at least some of these can probably be moved to CC0)

Harvested item in Japanese: [10]

Data of specific file types; non-proprietary file formats are preferable: